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bioconda / packages / bioconductor-harmandata 1.30.0

Data for the Harman package

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.30.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-harmandata
conda install bioconda/label/gcc7::bioconductor-harmandata

Description

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.


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