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bioconda / packages / bioconductor-granulator 1.14.0

Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data

Installers

  • noarch v1.14.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-granulator

Description

granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.


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