bioconductor-granulator
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
To install this package, run one of the following:
granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.
Summary
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
Last Updated
Dec 14, 2024 at 14:27
License
GPL-3
Total Downloads
10.1K
Supported Platforms