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bioconda / packages / bioconductor-gmapr 1.44.0

An R interface to the GMAP/GSNAP/GSTRUCT suite

Installers

Info: This package contains files in non-standard labels.
  • linux-aarch64 v1.44.0
  • linux-64 v1.44.0
  • osx-64 v1.44.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-gmapr
conda install bioconda/label/gcc7::bioconductor-gmapr

Description

GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool.

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