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bioconductor-ggspavis

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Visualization functions for spatial transcriptomics data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-ggspavis

Usage Tracking

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Description

Visualization functions for spatial transcriptomics data. Includes functions to generate several types of plots, including spot plots, feature (molecule) plots, reduced dimension plots, spot-level quality control (QC) plots, and feature-level QC plots, for datasets from the 10x Genomics Visium and other technological platforms. Datasets are assumed to be in either SpatialExperiment or SingleCellExperiment format.

About

Summary

Visualization functions for spatial transcriptomics data

Last Updated

Dec 22, 2024 at 12:01

License

MIT + file LICENSE

Total Downloads

7.6K

Supported Platforms

noarch