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bioconductor-genomicinstability

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Genomic Instability estimation for scRNA-Seq

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-genomicinstability

Usage Tracking

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Description

This package contain functions to run genomic instability analysis (GIA) from scRNA-Seq data. GIA estimates the association between gene expression and genomic location of the coding genes. It uses the aREA algorithm to quantify the enrichment of sets of contiguous genes (loci-blocks) on the gene expression profiles and estimates the Genomic Instability Score (GIS) for each analyzed cell.

About

Summary

Genomic Instability estimation for scRNA-Seq

Last Updated

Dec 22, 2024 at 00:00

License

file LICENSE

Total Downloads

7.3K

Supported Platforms

noarch