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bioconda / packages / bioconductor-findit2 1.8.0

find influential TF and Target based on multi-omics data

Installers

  • noarch v1.8.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-findit2

Description

This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function like integrate different source information, calculate jaccard similarity for your TF.


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