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bioconda / packages / bioconductor-filterffpe 1.16.0

FFPE Artificial Chimeric Read Filter for NGS data

Installers

  • noarch v1.16.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-filterffpe

Description

This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample.

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