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bioconductor-fieldeffectcrc

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Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-fieldeffectcrc

Usage Tracking

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Description

Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).

About

Summary

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Information Last Updated

Apr 22, 2025 at 15:29

License

Artistic-2.0

Total Downloads

13.3K

Platforms

noarch Version: 1.16.0