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Fisher's Test for Enrichment and Depletion of User-Defined Pathways
Fisher's Test for Enrichment and Depletion of User-Defined Pathways
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An R package that tests for enrichment and depletion of user-defined pathways using a Fisher's exact test. The method is designed for versatile pathway annotation formats (eg. gmt, txt, xlsx) to allow the user to run pathway analysis on custom annotations. This package is also integrated with Cytoscape to provide network-based pathway visualization that enhances the interpretability of the results.
Summary
Fisher's Test for Enrichment and Depletion of User-Defined Pathways
Last Updated
Dec 19, 2024 at 00:12
License
MIT + file LICENSE
Total Downloads
10.1K
Supported Platforms