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Fisher's Test for Enrichment and Depletion of User-Defined Pathways

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-fedup

Usage Tracking

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Description

An R package that tests for enrichment and depletion of user-defined pathways using a Fisher's exact test. The method is designed for versatile pathway annotation formats (eg. gmt, txt, xlsx) to allow the user to run pathway analysis on custom annotations. This package is also integrated with Cytoscape to provide network-based pathway visualization that enhances the interpretability of the results.

About

Summary

Fisher's Test for Enrichment and Depletion of User-Defined Pathways

Last Updated

Dec 19, 2024 at 00:12

License

MIT + file LICENSE

Total Downloads

10.1K

Supported Platforms

noarch