bioconda / packages / bioconductor-eventpointer 2.6.0

An effective identification of alternative splicing events using junction arrays and RNA-Seq data


Info: This package contains files in non-standard labels.

conda install

  • noarch  v2.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-eventpointer
conda install -c bioconda/label/gcc7 bioconductor-eventpointer


EventPointer is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3',...,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation.

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