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bioconductor-enhancerhomologsearch

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Identification of putative mammalian orthologs to given enhancer

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-enhancerhomologsearch

Usage Tracking

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Description

Get ENCODE data of enhancer region via H3K4me1 peaks and search homolog regions for given sequences. The candidates of enhancer homolog regions can be filtered by distance to target TSS. The top candidates from human and mouse will be aligned to each other and then exported as multiple alignments with given enhancer.

About

Summary

Identification of putative mammalian orthologs to given enhancer

Last Updated

Jan 3, 2025 at 16:57

License

GPL (>= 2)

Total Downloads

9.9K

Supported Platforms

linux-64
macOS-64