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bioconductor-easylift

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An R package to perform genomic liftover

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-easylift

Usage Tracking

1.4.0
1.0.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

The easylift package provides a convenient tool for genomic liftover operations between different genome assemblies. It seamlessly works with Bioconductor's GRanges objects and chain files from the UCSC Genome Browser, allowing for straightforward handling of genomic ranges across various genome versions. One noteworthy feature of easylift is its integration with the BiocFileCache package. This integration automates the management and caching of chain files necessary for liftover operations. Users no longer need to manually specify chain file paths in their function calls, reducing the complexity of the liftover process.

About

Summary

An R package to perform genomic liftover

Last Updated

Jan 3, 2025 at 17:03

License

MIT + file LICENSE

Total Downloads

1.6K

Supported Platforms

noarch