bioconductor-dominosignal
Cell Communication Analysis for Single Cell RNA Sequencing
Cell Communication Analysis for Single Cell RNA Sequencing
To install this package, run one of the following:
dominoSignal is a package developed to analyze cell signaling through ligand - receptor - transcription factor networks in scRNAseq data. It takes as input information transcriptomic data, requiring counts, z-scored counts, and cluster labels, as well as information on transcription factor activation (such as from SCENIC) and a database of ligand and receptor pairings (such as from CellPhoneDB). This package creates an object storing ligand - receptor - transcription factor linkages by cluster and provides several methods for exploring, summarizing, and visualizing the analysis.
Summary
Cell Communication Analysis for Single Cell RNA Sequencing
Last Updated
Dec 21, 2024 at 08:05
License
GPL-3 | file LICENSE
Total Downloads
371
Supported Platforms