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bioconductor-dominosignal

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Cell Communication Analysis for Single Cell RNA Sequencing

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-dominosignal

Usage Tracking

1.0.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

dominoSignal is a package developed to analyze cell signaling through ligand - receptor - transcription factor networks in scRNAseq data. It takes as input information transcriptomic data, requiring counts, z-scored counts, and cluster labels, as well as information on transcription factor activation (such as from SCENIC) and a database of ligand and receptor pairings (such as from CellPhoneDB). This package creates an object storing ligand - receptor - transcription factor linkages by cluster and provides several methods for exploring, summarizing, and visualizing the analysis.

About

Summary

Cell Communication Analysis for Single Cell RNA Sequencing

Last Updated

Dec 21, 2024 at 08:05

License

GPL-3 | file LICENSE

Total Downloads

371

Supported Platforms

noarch