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bioconductor-demuxmix

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Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-demuxmix

Usage Tracking

1.8.0
1.4.0
1.2.0
1.0.0
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Downloads (Last 6 months): 0

Description

A package for demultiplexing single-cell sequencing experiments of pooled cells labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.

About

Summary

Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

Last Updated

Dec 14, 2024 at 15:03

License

Artistic-2.0

Total Downloads

4.9K

Supported Platforms

noarch