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bioconductor-debcam

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Deconvolution by Convex Analysis of Mixtures

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-debcam

Usage Tracking

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Description

An R package for fully unsupervised deconvolution of complex tissues. It provides basic functions to perform unsupervised deconvolution on mixture expression profiles by Convex Analysis of Mixtures (CAM) and some auxiliary functions to help understand the subpopulation-specific results. It also implements functions to perform supervised deconvolution based on prior knowledge of molecular markers, S matrix or A matrix. Combining molecular markers from CAM and from prior knowledge can achieve semi-supervised deconvolution of mixtures.

About

Summary

Deconvolution by Convex Analysis of Mixtures

Last Updated

Dec 22, 2024 at 02:35

License

GPL-2

Total Downloads

16.1K

Supported Platforms

noarch