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bioconductor-cytomapper

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Visualization of highly multiplexed imaging data in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cytomapper

Usage Tracking

1.18.0
1.14.0
1.12.0
1.10.0
1.6.0
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Total downloads: 0

Description

Highly multiplexed imaging acquires the single-cell expression of selected proteins in a spatially-resolved fashion. These measurements can be visualised across multiple length-scales. First, pixel-level intensities represent the spatial distributions of feature expression with highest resolution. Second, after segmentation, expression values or cell-level metadata (e.g. cell-type information) can be visualised on segmented cell areas. This package contains functions for the visualisation of multiplexed read-outs and cell-level information obtained by multiplexed imaging technologies. The main functions of this package allow 1. the visualisation of pixel-level information across multiple channels, 2. the display of cell-level information (expression and/or metadata) on segmentation masks and 3. gating and visualisation of single cells.

About

Summary

Visualization of highly multiplexed imaging data in R

Information Last Updated

Apr 22, 2025 at 15:29

License

GPL (>= 2)

Total Downloads

18.2K

Platforms

noarch Version: 1.18.0