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bioconda / packages / bioconductor-cypress 1.6.0

Cell-Type-Specific Power Assessment

Installers

  • noarch v1.6.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-cypress

Description

CYPRESS is a cell-type-specific power tool. This package aims to perform power analysis for the cell-type-specific data. It calculates FDR, FDC, and power, under various study design parameters, including but not limited to sample size, and effect size. It takes the input of a SummarizeExperimental(SE) object with observed mixture data (feature by sample matrix), and the cell-type mixture proportions (sample by cell-type matrix). It can solve the cell-type mixture proportions from the reference free panel from TOAST and conduct tests to identify cell-type-specific differential expression (csDE) genes.


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