bioconda / packages / bioconductor-csar 1.40.0

Statistical tools for the analysis of ChIP-seq data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.40.0
  • osx-64  v1.40.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-csar
conda install -c bioconda/label/gcc7 bioconductor-csar

Description

Statistical tools for ChIP-seq data analysis. The package includes the statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.

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