bioconda / packages / bioconductor-copywriter 2.26.0

Copy number information from targeted sequencing using off-target reads

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.12.0
  • osx-64  v2.10.0
  • noarch  v2.26.0
To install this package run one of the following:
conda install -c bioconda bioconductor-copywriter
conda install -c "bioconda/label/gcc7" bioconductor-copywriter
conda install -c "bioconda/label/cf201901" bioconductor-copywriter

Description

CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.


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