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bioconductor-consensusseeker

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Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-consensusseeker

Usage Tracking

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Description

This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. In genomic analysis where feature identification generates a position value surrounded by a genomic range, such as ChIP-Seq peaks and nucleosome positions, the replication of an experiment may result in slight differences between predicted values. This package enables the conciliation of the results into consensus regions.

About

Summary

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Last Updated

Dec 26, 2024 at 21:45

License

Artistic-2.0

Total Downloads

35.3K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.8.0
macOS-64 Last supported version: 1.8.0