bioconda / packages / bioconductor-cleanupdtseq 1.26.0

This package classifies putative polyadenylation sites as true or false/internally oligodT primed


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.18.0
  • osx-64  v1.18.0
  • noarch  v1.26.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cleanupdtseq
conda install -c bioconda/label/gcc7 bioconductor-cleanupdtseq
conda install -c bioconda/label/cf201901 bioconductor-cleanupdtseq


This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.

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