bioconda / packages / bioconductor-cimice 1.6.0

CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution


  • noarch v1.6.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-cimice


CIMICE is a tool in the field of tumor phylogenetics and its goal is to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix, so a boolean matrix representing altered genes in a collection of samples. These samples are assumed to be obtained with single-cell DNA analysis techniques and the tool is specifically written to use the peculiarities of this data for the CMPC construction.

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