bioconda / packages / bioconductor-cellscore 1.8.0

Tool for Evaluation of Cell Identity from Transcription Profiles

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.8.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cellscore
conda install -c bioconda/label/gcc7 bioconductor-cellscore

Description

The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.

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