bioconda / packages / bioconductor-cellarepertorium 1.2.0

Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)


conda install

  • linux-64  v1.2.0
  • osx-64  v1.2.0
To install this package with conda run:
conda install -c bioconda bioconductor-cellarepertorium


Methods to cluster and analyze high-throughput single cell immune cell repertoires, especially from the 10X Genomics VDJ solution. Contains an R interface to CD-HIT (Li and Godzik 2006). Methods to visualize and analyze paired heavy-light chain data. Tests for specific expansion, as well as omnibus oligoclonality under hypergeometric models.

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