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bioconda / packages / bioconductor-celda 1.18.1

CEllular Latent Dirichlet Allocation

Installers

  • osx-64 v1.18.1
  • linux-64 v1.18.1

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-celda

Description

Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also contains DecontX, a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. A variety of scRNA-seq data visualization functions is also included.


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