bioconda / packages / bioconductor-cbea 1.2.0

Competitive Balances for Taxonomic Enrichment Analysis in R

Installers

  • linux-64 v1.2.0
  • osx-64 v1.2.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-cbea

Description

This package implements CBEA, a method to perform set-based analysis for microbiome relative abundance data. This approach constructs a competitive balance between taxa within the set and remainder taxa per sample. More details can be found in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions to help users perform taxa-set enrichment analyses using existing gene set analysis methods. In the future we hope to also provide curated knowledge driven taxa sets.


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