bioconductor-catscradle
This package provides methods for analysing spatial transcriptomics data and for discovering gene clusters
This package provides methods for analysing spatial transcriptomics data and for discovering gene clusters
To install this package, run one of the following:
This package addresses two broad areas. It allows for in-depth analysis of spatial transcriptomic data by identifying tissue neighbourhoods. These are contiguous regions of tissue surrounding individual cells. 'CatsCradle' allows for the categorisation of neighbourhoods by the cell types contained in them and the genes expressed in them. In particular, it produces Seurat objects whose individual elements are neighbourhoods rather than cells. In addition, it enables the categorisation and annotation of genes by producing Seurat objects whose elements are genes.
Summary
This package provides methods for analysing spatial transcriptomics data and for discovering gene clusters
Last Updated
Dec 22, 2024 at 11:05
License
MIT + file LICENSE
Total Downloads
397
Supported Platforms