bioconda / packages / bioconductor-cancermutationanalysis 1.32.0

Cancer mutation analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.32.0
  • osx-64  v1.32.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cancermutationanalysis
conda install -c bioconda/label/gcc7 bioconductor-cancermutationanalysis
conda install -c bioconda/label/cf201901 bioconductor-cancermutationanalysis

Description

This package implements gene and gene-set level analysis methods for somatic mutation studies of cancer. The gene-level methods distinguish between driver genes (which play an active role in tumorigenesis) and passenger genes (which are mutated in tumor samples, but have no role in tumorigenesis) and incorporate a two-stage study design. The gene-set methods implement a patient-oriented approach, which calculates gene-set scores for each sample, then combines them across samples; a gene-oriented approach which uses the Wilcoxon test is also provided for comparison.


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