bioconductor-cageminer
Candidate Gene Miner
Candidate Gene Miner
To install this package, run one of the following:
This package aims to integrate GWAS-derived SNPs and coexpression networks to mine candidate genes associated with a particular phenotype. For that, users must define a set of guide genes, which are known genes involved in the studied phenotype. Additionally, the mined candidates can be given a score that favor candidates that are hubs and/or transcription factors. The scores can then be used to rank and select the top n most promising genes for downstream experiments.
Summary
Candidate Gene Miner
Last Updated
Mar 3, 2026 at 21:47
License
GPL-3
Total Downloads
7.7K
Version Downloads
26
Supported Platforms