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bioconda / packages / bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 26 days ago 215 main
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 817 main
conda 9.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 1 month ago 401 main
conda 8.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 621 main
conda 9.1 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 251 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 698 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 324 main
conda 8.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 207 main
conda 7.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 232 main
conda 7.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 235 main
conda 7.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 263 main
conda 7.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_2.tar.bz2  6 years and 14 days ago 258 main
conda 6.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r351_0.tar.bz2  6 years and 8 months ago 309 main gcc7
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