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bioconda / packages / bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r44hdfd78af_13.tar.bz2  9 months and 6 days ago 225 main
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 9 months ago 827 main
conda 9.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 2 months ago 411 main
conda 8.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 10 months ago 631 main
conda 9.1 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_9.tar.bz2  3 years and 1 month ago 261 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 10 months ago 708 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 4 months ago 334 main
conda 8.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 6 months ago 217 main
conda 7.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_5.tar.bz2  4 years and 11 months ago 242 main
conda 7.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_4.tar.bz2  5 years and 4 months ago 244 main
conda 7.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_3.tar.bz2  5 years and 11 months ago 274 main
conda 7.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_2.tar.bz2  6 years and 1 month ago 269 main
conda 6.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r351_0.tar.bz2  6 years and 9 months ago 319 main gcc7
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