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bioconda / packages / bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 21 days ago 213 main
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 815 main
conda 9.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 1 month ago 399 main
conda 8.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 619 main
conda 9.1 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 249 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 696 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 322 main
conda 8.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 205 main
conda 7.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 230 main
conda 7.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 233 main
conda 7.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 262 main
conda 7.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_2.tar.bz2  6 years and 9 days ago 257 main
conda 6.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r351_0.tar.bz2  6 years and 8 months ago 307 main gcc7
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