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bioconda / packages / bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 28 days ago 215 main
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 818 main
conda 9.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 1 month ago 402 main
conda 8.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 622 main
conda 9.1 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 252 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 699 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 325 main
conda 8.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 208 main
conda 7.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 233 main
conda 7.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 236 main
conda 7.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 265 main
conda 7.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_2.tar.bz2  6 years and 16 days ago 260 main
conda 6.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r351_0.tar.bz2  6 years and 8 months ago 310 main gcc7
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