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bioconda / packages / bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 30 days ago 216 main
conda 9.3 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 819 main
conda 9.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 1 month ago 403 main
conda 8.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 623 main
conda 9.1 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 253 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 700 main
conda 8.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 326 main
conda 8.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 209 main
conda 7.7 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 234 main
conda 7.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 236 main
conda 7.2 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 266 main
conda 7.0 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r36_2.tar.bz2  6 years and 18 days ago 261 main
conda 6.5 kB | noarch/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked-1.3.99-r351_0.tar.bz2  6 years and 8 months ago 311 main gcc7
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