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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm10.masked 1.4.3

Full masked genome sequences for Mus musculus (UCSC genome mm10, based on GRCm38.p6)

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.4.3

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-bsgenome.mmusculus.ucsc.mm10.masked
conda install bioconda/label/gcc7::bioconductor-bsgenome.mmusculus.ucsc.mm10.masked

Description

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm10, based on GRCm38.p6) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).

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