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bioconda / packages / bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked

Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.4 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r43hdfd78af_12.tar.bz2  9 months and 4 hours ago 550 main
conda 9.2 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 1 month ago 336 main
conda 8.7 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r42hdfd78af_10.tar.bz2  1 year and 10 months ago 565 main
conda 9.0 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 8 days ago 194 main
conda 8.2 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r41hdfd78af_8.tar.bz2  2 years and 10 months ago 647 main
conda 8.1 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 3 months ago 271 main
conda 8.0 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 5 months ago 157 main
conda 7.7 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r40_5.tar.bz2  3 years and 10 months ago 174 main
conda 7.6 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r40_4.tar.bz2  4 years and 4 months ago 199 main
conda 7.2 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r36_3.tar.bz2  4 years and 10 months ago 227 main
conda 7.1 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r36_2.tar.bz2  5 years and 1 month ago 243 main
conda 6.6 kB | noarch/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked-1.3.99-r351_0.tar.bz2  5 years and 8 months ago 274 main gcc7

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