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bioconda / packages / bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked

Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.4 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r44hdfd78af_13.tar.bz2  22 days and 14 hours ago 65 main
conda 9.3 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 1 month ago 786 main
conda 9.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 6 months ago 363 main
conda 8.7 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 2 months ago 598 main
conda 9.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 4 months ago 207 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 2 months ago 696 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 7 months ago 296 main
conda 8.0 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 9 months ago 176 main
conda 7.8 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40_5.tar.bz2  4 years and 2 months ago 184 main
conda 7.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40_4.tar.bz2  4 years and 8 months ago 194 main
conda 7.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r36_3.tar.bz2  5 years and 2 months ago 223 main
conda 7.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r36_2.tar.bz2  5 years and 5 months ago 245 main
conda 6.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r351_0.tar.bz2  6 years and 1 month ago 278 main gcc7

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