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bioconda / packages / bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked

Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r43hdfd78af_12.tar.bz2  9 months and 5 days ago 574 main
conda 9.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 2 months ago 344 main
conda 8.7 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r42hdfd78af_10.tar.bz2  1 year and 10 months ago 579 main
conda 9.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 13 days ago 189 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_8.tar.bz2  2 years and 10 months ago 679 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 3 months ago 278 main
conda 8.0 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 5 months ago 158 main
conda 7.8 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40_5.tar.bz2  3 years and 10 months ago 167 main
conda 7.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r40_4.tar.bz2  4 years and 4 months ago 176 main
conda 7.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r36_3.tar.bz2  4 years and 10 months ago 206 main
conda 7.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r36_2.tar.bz2  5 years and 1 month ago 227 main
conda 6.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked-1.3.99-r351_0.tar.bz2  5 years and 9 months ago 260 main gcc7

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