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bioconda / packages / bioconductor-batchelor 1.18.0

Single-Cell Batch Correction Methods

Installers

  • linux-aarch64 v1.18.0
  • linux-64 v1.18.0
  • osx-64 v1.18.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-batchelor

Description

Implements a variety of methods for batch correction of single-cell (RNA sequencing) data. This includes methods based on detecting mutually nearest neighbors, as well as several efficient variants of linear regression of the log-expression values. Functions are also provided to perform global rescaling to remove differences in depth between batches, and to perform a principal components analysis that is robust to differences in the numbers of cells across batches.


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