bioconda / packages / bioconductor-bandits 1.4.0

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Installers

conda install

  • linux-64  v1.4.0
  • osx-64  v1.4.0
To install this package with conda run:
conda install -c bioconda bioconductor-bandits

Description

BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts, via differential transcript usage (DTU), between two or more conditions. The method uses a Bayesian hierarchical framework, which allows for sample specific proportions in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts. Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.

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