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bioconda / packages / bioconductor-awaggregator 1.0.0

Attribute-Weighted Aggregation

Installers

  • noarch v1.0.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-awaggregator

Description

This package implements an attribute-weighted aggregation algorithm which leverages peptide-spectrum match (PSM) attributes to provide a more accurate estimate of protein abundance compared to conventional aggregation methods. This algorithm employs pre-trained random forest models to predict the quantitative inaccuracy of PSMs based on their attributes. PSMs are then aggregated to the protein level using a weighted average, taking the predicted inaccuracy into account. Additionally, the package allows users to construct their own training sets that are more relevant to their specific experimental conditions if desired.


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