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bioconda / packages / bioconductor-atena 1.8.0

Analysis of Transposable Elements

Installers

  • noarch v1.8.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-atena

Description

Quantify expression of transposable elements (TEs) from RNA-seq data through different methods, including ERVmap, TEtranscripts and Telescope. A common interface is provided to use each of these methods, which consists of building a parameter object, calling the quantification function with this object and getting a SummarizedExperiment object as output container of the quantified expression profiles. The implementation allows one to quantify TEs and gene transcripts in an integrated manner.


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