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bioconductor-ahpathbankdbs

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Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-ahpathbankdbs

Usage Tracking

0.99.5
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Downloads (Last 6 months): 0

Description

The package provides a comprehensive mapping table of metabolites and proteins linked to PathBank pathways. The tables include HMDB, KEGG, ChEBI, CAS, Drugbank, Uniprot IDs. The tables are provided for each of the 10 species ("Homo sapiens", "Escherichia coli", "Mus musculus", "Arabidopsis thaliana", "Saccharomyces cerevisiae", "Bos taurus", "Caenorhabditis elegans", "Rattus norvegicus", "Drosophila melanogaster", and "Pseudomonas aeruginosa"). These table information can be used for Metabolite Set (and other) Enrichment Analysis.

About

Summary

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Last Updated

Jun 1, 2021 at 20:44

License

Artistic-2.0

Total Downloads

3.8K

Supported Platforms

noarch