bioconda / packages / bioconductor-affxparser 1.60.0

Affymetrix File Parsing SDK

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.60.0
  • osx-64  v1.60.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-affxparser
conda install -c bioconda/label/gcc7 bioconductor-affxparser
conda install -c bioconda/label/cf201901 bioconductor-affxparser

Description

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

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