bioconda / packages / bioconductor-affxparser 1.60.0

Affymetrix File Parsing SDK


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.60.0
  • osx-64  v1.60.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-affxparser
conda install -c bioconda/label/gcc7 bioconductor-affxparser
conda install -c bioconda/label/cf201901 bioconductor-affxparser


Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

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