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bioconductor-adacgh2

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Analysis of big data from aCGH experiments using parallel computing and ff objects

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-adacgh2

Usage Tracking

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Downloads (Last 6 months): 0

Description

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.

About

Summary

Analysis of big data from aCGH experiments using parallel computing and ff objects

Last Updated

Dec 17, 2023 at 19:07

License

GPL (>= 3)

Total Downloads

27.8K

Supported Platforms

linux-64
macOS-64