bioconda / packages / bioconductor-adacgh2 2.28.0

Analysis of big data from aCGH experiments using parallel computing and ff objects

Installers

conda install

  • linux-64  v2.28.0
  • osx-64  v2.28.0
To install this package with conda run:
conda install -c bioconda bioconductor-adacgh2

Description

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.

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