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biocamlib

Community

An OCaml foundation upon which a number of the bioinformatics tools are built.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::biocamlib

Usage Tracking

1.0.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

BiOCamLib is an OCaml foundation upon which a number of the bioinformatics tools are built, including KPop https://github.com/PaoloRibeca/KPop. It consists of four tools: 1. RC, which can efficiently compute the reverse complement of sequences. 2. Octopus, which is a high-throughput program to compute the transitive closure of strings. 3. Parallel, which allows the splits and processes an input file chunk-wise using a reader/workers/writer model. 4. FASTools, which is a Swiss-knife tool for the manipulation of FASTA/FASTQ files.

About

Summary

An OCaml foundation upon which a number of the bioinformatics tools are built.

Last Updated

Mar 14, 2024 at 22:43

License

GPL-3.0-only

Total Downloads

1.1K

Supported Platforms

linux-64
macOS-64