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BEHST reads an input dataset of chromosome regions, and intersects them with the chromatin interactions available in the Hi-C dataset. Of these chromosome regions, BEHST selects those that are presentthe regulatory regions of genes of APPRIS, a dataset of principal isoform annotations. We defined these cis-regulatory regions upon the position of their nearest transcription start site of the APPRIS genes' principal transcripts (obtained through GENCODE), plus an upstream and downstream extension. Afterwards, BEHST takes the genes of the resulting partner loci found in gene regulatory regions, and performs a gene set enrichment analysis on them through g:Profiler. BEHST, finally, outputs the list of the most significant Gene Ontology terms detected by g:Profiler. Citation: Davide Chicco, Haixin Sarah Bi, Juri Reimand, and Michael M. Hoffman, 'BEHST: Genomic set enrichment analysis enhanced through integration of chromatin long-range interactions', 2018. In preparation. Website: http://behst.hoffmanlab.org/

Type Size Name Uploaded Downloads Labels
conda 22.3 kB | noarch/behst-3.7-0.tar.bz2  6 years and 1 month ago 300 main cf201901
conda 22.3 kB | noarch/behst-3.6-0.tar.bz2  6 years and 1 month ago 2423 main cf201901
conda 22.2 kB | noarch/behst-3.5-0.tar.bz2  6 years and 1 month ago 2442 main cf201901
conda 20.9 kB | noarch/behst-3.0-0.tar.bz2  6 years and 4 months ago 2448 main cf201901
conda 20.5 kB | linux-64/behst-2.9-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 550 main cf201901
conda 20.3 kB | osx-64/behst-2.9-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 4193 main cf201901
conda 20.5 kB | linux-64/behst-2.8-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 547 main cf201901
conda 20.3 kB | osx-64/behst-2.8-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 4200 main cf201901
conda 20.5 kB | linux-64/behst-2.7-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 544 main cf201901
conda 20.4 kB | osx-64/behst-2.7-py35r3.4.1_0.tar.bz2  6 years and 9 months ago 4198 main cf201901
conda 20.5 kB | linux-64/behst-2.6-py27r3.4.1_0.tar.bz2  6 years and 9 months ago 559 main cf201901
conda 20.3 kB | osx-64/behst-2.6-py27r3.4.1_0.tar.bz2  6 years and 9 months ago 4206 main cf201901
conda 44.1 kB | osx-64/behst-2.5-py27r3.4.1_0.tar.bz2  6 years and 9 months ago 4200 main cf201901
conda 44.2 kB | linux-64/behst-2.5-py27r3.4.1_0.tar.bz2  6 years and 9 months ago 542 main cf201901
conda 41.8 kB | osx-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 10 days ago 4205 main cf201901
conda 42.2 kB | linux-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 10 days ago 833 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 2 months ago 675 main cf201901
conda 41.7 kB | osx-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 2 months ago 4113 main cf201901
conda 41.6 kB | osx-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 192 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 817 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 2 months ago 822 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 2 months ago 4208 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 107 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 662 main cf201901
conda 41.5 kB | osx-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 4211 main cf201901
conda 41.7 kB | linux-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 2 months ago 839 main cf201901
conda 40.9 kB | osx-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 3 months ago 4204 main cf201901
conda 41.0 kB | linux-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 3 months ago 834 main cf201901
conda 40.7 kB | osx-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 3 months ago 4160 main cf201901
conda 40.8 kB | linux-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 3 months ago 832 main cf201901
conda 40.4 kB | osx-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 4 months ago 4176 main cf201901
conda 40.7 kB | linux-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 4 months ago 845 main cf201901

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