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Extract byte ranges from BAM files and convert to interleaved FASTQ format for parallel processing

Installers

  • linux-aarch64 v0.1.7
  • linux-64 v0.1.7
  • osx-arm64 v0.1.7
  • osx-64 v0.1.7

conda install

To install this package run one of the following:
conda install bioconda::bamslice

Description

bamslice extracts specific byte ranges from BAM files and converts them to interleaved FASTQ format. Designed for parallel processing across compute nodes without requiring pre-indexing. It auto-aligns to BGZF block boundaries and guarantees no duplicate reads when using contiguous byte ranges.


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