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astral-tree

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ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::astral-tree

Usage Tracking

5.7.8
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Downloads (Last 6 months): 0

Description

ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. ASTRAL is statistically consistent under the multi-species coalescent model (and thus is useful for handling incomplete lineage sorting, i.e., ILS). ASTRAL finds the species tree that has the maximum number of shared induced quartet trees with the set of gene trees, subject to the constraint that the set of bipartitions in the species tree comes from a predefined set of bipartitions. This predefined set is empirically decided by ASTRAL (but see tutorial on how to expand it). The current code corresponds to ASTRAL-III.

About

Summary

ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

Last Updated

Apr 12, 2022 at 12:37

License

Apache License 2.0

Total Downloads

4.8K

Supported Platforms

noarch