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HCC / packages

Package Name Access Summary Updated
metacompass public MetaCompass: Reference-guided Assembly of Metagenomes. 2025-08-06
gsl public GNU Scientific Library 2025-08-04
bioemu public Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning. 2025-07-29
abinit public ABINIT is an atomic-scale simulation software suite. 2025-07-29
pytorch public Tensors and Dynamic neural networks in Python with strong GPU acceleration 2025-07-25
openmpi public Message Passing Interface 2025-07-25
isonclust3 public De novo clustering of long transcript reads into genes. 2025-07-07
npinv public an accurate tool for detecting and genotyping inversion using multiple alignment long reads 2025-06-12
qupath public QuPath is open source software for bioimage analysis. 2025-05-11
hcc-jupyter-kernels public Jupyter kernelspec files for HCC resources 2025-04-15
julia public A high-performance dynamic programming language for data science 2025-04-13
sequeltools public A suite of tools for working with PacBio Sequel raw sequence data. 2025-03-26
deepmriprep public Neural network-based preprocessing of MRI data. Prepping brain images in seconds. 2025-03-25
torchreg public Lightweight image registration library using PyTorch 2025-03-25
deepbet public Fast brain extraction using neural networks 2025-03-25
fill-voids public Fill voids in 3D binary images fast. 2025-03-25
fpocket public fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. 2025-03-25
sequencetubemap public Displays multiple genomic sequences in the form of a tube map. 2025-03-25
lumpy public The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks. 2025-03-25
vcfstats public Powerful statistics for VCF files 2025-03-25
vcfsort public Sorts a VCF file (for human) by chromosome. 2025-03-25
datar public A Grammar of Data Manipulation in python 2025-03-25
simplug public A simple plugin system for python with async hooks supported 2025-03-25
plotnine-prism public Prism themes for plotnine, inspired by ggprism 2025-03-25
mumaxplus public More versatile and extensible GPU-accelerated micromagnetic simulator. 2025-03-25

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