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toga
|
public |
TOGA is a new method that integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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2025-08-30 |
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compass-cplex
|
public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
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2025-08-27 |
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metacompass
|
public |
MetaCompass: Reference-guided Assembly of Metagenomes.
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2025-08-06 |
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gsl
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public |
GNU Scientific Library
|
2025-08-04 |
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bioemu
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public |
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning.
|
2025-07-29 |
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abinit
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public |
ABINIT is an atomic-scale simulation software suite.
|
2025-07-29 |
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pytorch
|
public |
Tensors and Dynamic neural networks in Python with strong GPU acceleration
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2025-07-25 |
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openmpi
|
public |
Message Passing Interface
|
2025-07-25 |
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isonclust3
|
public |
De novo clustering of long transcript reads into genes.
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2025-07-07 |
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npinv
|
public |
an accurate tool for detecting and genotyping inversion using multiple alignment long reads
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2025-06-12 |
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qupath
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public |
QuPath is open source software for bioimage analysis.
|
2025-05-11 |
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hcc-jupyter-kernels
|
public |
Jupyter kernelspec files for HCC resources
|
2025-04-15 |
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julia
|
public |
A high-performance dynamic programming language for data science
|
2025-04-13 |
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sequeltools
|
public |
A suite of tools for working with PacBio Sequel raw sequence data.
|
2025-03-26 |
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deepmriprep
|
public |
Neural network-based preprocessing of MRI data. Prepping brain images in seconds.
|
2025-03-25 |
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torchreg
|
public |
Lightweight image registration library using PyTorch
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2025-03-25 |
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deepbet
|
public |
Fast brain extraction using neural networks
|
2025-03-25 |
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fill-voids
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public |
Fill voids in 3D binary images fast.
|
2025-03-25 |
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fpocket
|
public |
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation.
|
2025-03-25 |
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sequencetubemap
|
public |
Displays multiple genomic sequences in the form of a tube map.
|
2025-03-25 |
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lumpy
|
public |
The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks.
|
2025-03-25 |
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vcfstats
|
public |
Powerful statistics for VCF files
|
2025-03-25 |
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vcfsort
|
public |
Sorts a VCF file (for human) by chromosome.
|
2025-03-25 |
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datar
|
public |
A Grammar of Data Manipulation in python
|
2025-03-25 |
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simplug
|
public |
A simple plugin system for python with async hooks supported
|
2025-03-25 |
