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sequeltools
|
public |
A suite of tools for working with PacBio Sequel raw sequence data.
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2025-03-26 |
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deepmriprep
|
public |
Neural network-based preprocessing of MRI data. Prepping brain images in seconds.
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2025-03-25 |
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torchreg
|
public |
Lightweight image registration library using PyTorch
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2025-03-25 |
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deepbet
|
public |
Fast brain extraction using neural networks
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2025-03-25 |
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fill-voids
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public |
Fill voids in 3D binary images fast.
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2025-03-25 |
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fpocket
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public |
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation.
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2025-03-25 |
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sequencetubemap
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public |
Displays multiple genomic sequences in the form of a tube map.
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2025-03-25 |
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lumpy
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public |
The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks.
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2025-03-25 |
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vcfstats
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public |
Powerful statistics for VCF files
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2025-03-25 |
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vcfsort
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public |
Sorts a VCF file (for human) by chromosome.
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2025-03-25 |
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datar
|
public |
A Grammar of Data Manipulation in python
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2025-03-25 |
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simplug
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public |
A simple plugin system for python with async hooks supported
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2025-03-25 |
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plotnine-prism
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public |
Prism themes for plotnine, inspired by ggprism
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2025-03-25 |
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mumaxplus
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public |
More versatile and extensible GPU-accelerated micromagnetic simulator.
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2025-03-25 |
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argx
|
public |
Super-charged argparse for python
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2025-03-25 |
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rtoml
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public |
A better TOML library for python implemented in rust.
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2025-03-25 |
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python-simpleconf
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public |
Simple configuration management with python.
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2025-03-25 |
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sniffles2-plot
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public |
Visualizer tool for plot generating
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2025-03-25 |
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compass-cplex
|
public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
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2025-03-25 |
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gsufsort
|
public |
Building suffix arrays, LCP-arrays and BWTs for string collections.
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2025-03-25 |
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biser
|
public |
Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.
|
2025-03-25 |
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seq
|
public |
Seq — the bioinformatics module for Codon.
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2025-03-25 |
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codon
|
public |
A high-performance, zero-overhead, extensible Python compiler using LLVM.
|
2025-03-25 |
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freesasa-cli
|
public |
Calculate solvent accessible surface areas of proteins
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2025-03-25 |
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juicer
|
public |
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
|
2025-03-25 |
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mrtrix3tissue
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public |
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
|
2025-03-25 |
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modflow-2005
|
public |
Three-dimensional finite-difference ground-water flow model.
|
2025-03-25 |
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cnvcaller
|
public |
CNVcaller is designed to detect copy number variation using sequencing data from populations.
|
2025-03-25 |
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poplddecay
|
public |
Fast and effective tool for linkage disequilibrium decay analysis.
|
2025-03-25 |
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tensorboard-plugin-profile
|
public |
A profiling and performance analysis tool for TensorFlow.
|
2025-03-25 |
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gviz-api
|
public |
Python API for Google Visualization
|
2025-03-25 |
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togl
|
public |
A Tcl/Tk widget for OpenGL rendering.
|
2025-03-25 |
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boa-bacfinder
|
public |
Find bacteriocins in bacterial genomes
|
2025-03-25 |
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deepemhancer
|
public |
Deep learning for cryo-EM maps post-processing.
|
2025-03-25 |
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tpg
|
public |
Toy Parser Generator is a lexical and syntactic parser generator for Python.
|
2025-03-25 |
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pysages
|
public |
Python Suite for Advanced General Ensemble Simulations.
|
2025-03-25 |
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libmcfp
|
public |
A header only library that can collect configuration options from command line arguments and configuration files.
|
2025-03-25 |
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psipred
|
public |
The PSIPRED Workbench provides a range of protein structure prediction methods.
|
2025-03-25 |
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revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-03-25 |
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consurf
|
public |
Stand Alone version of ConSurf
|
2025-03-25 |
|
jmodeltest
|
public |
jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution.
|
2025-03-25 |
|
prottest3
|
public |
ProtTest is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand.
|
2025-03-25 |
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rate4site
|
public |
Rate4Site is a program for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA)..
|
2025-03-25 |
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dorado
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2025-03-25 |
|
dorado-gpu
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2025-03-25 |
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subversion
|
public |
Enterprise-class centralized version control for the masses
|
2025-03-25 |
|
ashs
|
public |
ASHS is software for automatic segmentation of the medial temporal lobe (MTL) substructures from brain MRI scans.
|
2025-03-25 |
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shtns
|
public |
SHTns is a high performance library for Spherical Harmonic Transform written in C, aimed at numerical simulation (fluid flows, mhd, ...) in spherical geometries.
|
2025-03-25 |
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gurobi-matlab
|
public |
MATLAB files for Gurobi optimizer.
|
2025-03-25 |
|
nquire
|
public |
A statistical framework for ploidy estimation using NGS short-read data.
|
2025-03-25 |
