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hail
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public |
Hail is Python-based data analysis tool for working with genomic data.
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2025-03-25 |
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tsvfmt
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public |
Tab-separated file viewer for command line
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2025-03-25 |
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oviraptor
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public |
Oncoviral integration in cancer whole genome data
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2025-03-25 |
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lumpy-sv-basic
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public |
a general probabilistic framework for structural variant discovery
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2025-03-25 |
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reference_data
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public |
Versioning of reference data used in UMCCR pipelines, and python API to access it
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2025-03-25 |
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cpsr
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public |
Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer
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2025-03-25 |
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pcgr
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public |
Personal Cancer Genome Reporter (PCGR)- variant interpretation report for precision oncology
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2025-03-25 |
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multiqc
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public |
Create aggregate bioinformatics analysis reports across many samples and tools
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2025-03-25 |
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lzstring
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public |
lz-string for python
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2025-03-25 |
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spectra
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public |
Color scales and color conversion made easy for Python.
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2025-03-25 |
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versionpy
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public |
Small utility to track and bump the version of your python tool
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2025-03-25 |
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tsvtools
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public |
Utilities for operating with tab-separated files: viewing, filtering, reordering
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2025-03-25 |
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gdown
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public |
Google Drive direct download of big files.
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2025-03-25 |
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r-kableextra
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public |
Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'. Function 'kable()' is a light weight table generator coming from 'knitr'. This package simplifies the way to manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows users to construct complex tables and customize styles using a readable syntax.
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2025-03-25 |
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vcf_stuff
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public |
Evaluating, filtering, comparing, and visualising variant calls
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2025-03-25 |
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bed_annotation
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public |
Annotate BED files
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2025-03-25 |
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snakemake
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public |
Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
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2025-03-25 |
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clearup
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public |
Sample identity validation and mix-up check
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2025-03-25 |
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multiqc-clarity
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public |
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS.
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2025-03-25 |
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multiqc-az
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public |
No Summary
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2025-03-25 |
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ngs_utils
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public |
Python utilities for bioinformatics tools and pipelines
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2025-03-25 |
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targqc
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public |
Target capture coverage QC
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2025-03-25 |
